Jaroslav Hlinka |
“It’s magic,” the chief cook concluded, in awe.
“No, not magic,” the ship’s doctor replied. “It’s much more. It’s mathematics.” David Brin, Glory Season (1993) |
Research databases and networks
Journal publications
| [1] |
Isa Dallmer-Zerbe, Premysl Jiruska, and Jaroslav Hlinka.
Personalized dynamic network models of the human brain as a future tool for planning and optimizing epilepsy therapy. Epilepsia, 2023. |
| [2] |
Eva Landová, Silvie Rádlová, Anna Pidnebesna, David Tomeček, Markéta
Janovcová, Šárka Peléšková, Kristýna Sedláčková, Iveta
Štolhoferová, Jakub Polák, Jaroslav Hlinka, and Daniel Frynta.
Toward a reliable detection of arachnophobia: subjective, behavioral, and neurophysiological measures of fear response. Frontiers in Psychiatry, 14:1196785, 2023. |
| [3] |
Barbora Rehák Bučková, David Kala, Jakub Kořenek, Veronika Matušková,
Vojtěch Kumpošt, Lenka Svobodová, Jakub Otáhal, Antonín Škoch,
Vlastimil Šulc, Anna Olšerová, Martin Vyhnálek, Petr Janský, Aleš
Tomek, Petr Marusič, Přemysl Jiruška, and Jaroslav Hlinka.
Structural connectivity-based predictors of cognitive impairment in stroke patients attributable to aging. PLOS ONE, 18(4):e0280892, 2023. |
| [4] |
Barbora Rehák Bučková, Jan Mareš, Antonín Škoch, Jakub Kopal, Jaroslav
Tintěra, Robert Dineen, Kamila Řasová, and Jaroslav Hlinka.
Multimodal-neuroimaging machine-learning analysis of motor disability in multiple sclerosis. Brain Imaging and Behavior, 17(1):18-34, 2023. |
| [5] |
Anna Pidnebesna, Iveta Fajnerová, Jiří Horáček, and Jaroslav Hlinka.
Mixture Components Inference for Sparse Regression: Introduction and Application for Estimation of Neuronal Signal from fMRI BOLD. Applied Mathematical Modelling, 116:735-748, 2023. |
| [6] |
Anna Pidnebesna, Pavel Sanda, Adam Kalina, Jiri Hammer, Petr Marusic, Kamil
Vlcek, and Jaroslav Hlinka.
Tackling the challenges of group network inference from intracranial EEG data. Frontiers in Neuroscience, 16, 2022. |
| [7] |
Jaroslav Hlinka, Filip Děchtěrenko, Jan Rydlo, Renáta Androvičová, Martin
Vejmelka, Lucia Jajcay, Jaroslav Tintěra, Jiří Lukavský, and Jiří
Horáček.
The intra-session reliability of functional connectivity during naturalistic viewing conditions. Psychophysiology, n/a:e14075, 2022. e14075 PsyP-2022-0006. |
| [8] |
Arthur Matsuo Yamashita Rios De Sousa and Jaroslav Hlinka.
Assessing serial dependence in ordinal patterns processes using chi-squared tests with application to EEG data analysis. Chaos, 32(7), 2022. |
| [9] |
Antonín Škoch, Barbora Rehák Bučková, Jan Mareš, Jaroslav Tintěra, Pavel
Sanda, Lucia Jajcay, Jiří Horáček, Filip španiel, and Jaroslav Hlinka.
Human brain structural connectivity matrices-ready for modelling. Scientific Data, 9(1):486, 2022. |
| [10] |
Lucia Jajcay, David Tomeček, Jiří Horáček, Filip Španiel, and Jaroslav
Hlinka.
Brain functional connectivity asymmetry: Left hemisphere is more modular. Symmetry, 14(4), 2022. |
| [11] |
Radek Janca, Alena Jahodova, Jaroslav Hlinka, Petr Jezdik, Lena Svobodova,
Martin Kudr, Adam Kalina, Petr Marusic, Pavel Krsek, and Premysl Jiruska.
Ictal gamma-band interactions localize ictogenic nodes of the epileptic network in focal cortical dysplasia. Clinical Neurophysiology, 2021. |
| [12] |
Luigi Caputi, Anna Pidnebesna, and Jaroslav Hlinka.
Promises and pitfalls of topological data analysis for brain connectivity analysis. NeuroImage, page 118245, 2021. |
| [13] |
Alberto Pérez-Cervera and Jaroslav Hlinka.
Perturbations both trigger and delay seizures due to generic properties of slow-fast relaxation oscillators. PLoS Computational Biology, 17(3):e1008521, 2021. |
| [14] |
Jan Kudlacek, Jan Chvojka, Vojtech Kumpost, Barbora Hermanovska, Antonin
Posusta, John GR Jefferys, Matias I Maturana, Ondrej Novak, Mark J Cook,
Jakub Otahal, et al.
Long-term seizure dynamics are determined by the nature of seizures and the mutual interactions between them. Neurobiology of Disease, 154:105347, 2021. |
| [15] |
Jiří Anýž, Eduard Bakštein, Andrea Dally, Marián Kolenič, Jaroslav
Hlinka, Tereza Hartmannová, Kateřina Urbanová, Christoph U Correll, Daniel
Novák, Filip španiel, et al.
Validity of the aktibipo self-rating questionnaire for the digital self-assessment of mood and relapse detection in patients with bipolar disorder: Instrument validation study. JMIR mental health, 8(8):e26348, 2021. |
| [16] |
Jakub KoŘenek and Jaroslav Hlinka.
Causality in reversed time series: Reversed or conserved? Entropy, 23(8):1067, 2021. |
| [17] |
Kamila Řasová, Barbora Bučková, Terezie Prokopiusová, Marie Procházková,
Gabriela Angel, Magdaléna Marková, Natália Hrušková, Ivana
štětkáŘová, šárka špaňhelová, Jan Mareš, Jaroslav Tintěra, Petr
Zach, Vladimir Musil, and Jaroslav Hlinka.
A three-arm parallel-group exploratory trial documents balance improvement without much evidence of white matter integrity changes in people with multiple sclerosis following two months ambulatory neuroproprioceptive" facilitation and inhibition" physical therapy. European Journal of Physical and Rehabilitation Medicine, 2021. |
| [18] |
Barbora Bučková, Jakub Kopal, Kamila Řasová, Jaroslav Tintěra, and
Jaroslav Hlinka.
Open access: The effect of neurorehabilitation on multiple sclerosis—unlocking the resting-state fmri data. Frontiers in neuroscience, 15, 2021. |
| [19] |
Jacob Billings, Manish Saggar, Jaroslav Hlinka, Shella Keilholz, and Giovanni
Petri.
Simplicial and topological descriptions of human brain dynamics. Network Neuroscience, (Just Accepted):1-32, 2021. |
| [20] |
Stanislav Jiricek, Vlastimil Koudelka, Jaroslav Lacik, Cestmir Vejmola, David
Kuratko, Daniel K. Wójcik, Zbynek Raida, Jaroslav Hlinka, and Tomas
Palenicek.
Electrical source imaging in freely moving rats: Evaluation of a 12-electrode cortical electroencephalography system. Frontiers in Neuroinformatics, 14:68, 2021. |
| [21] |
Moritz Gerster, Halgurd Taher, Antonín Škoch, Jaroslav Hlinka, Maxime Guye,
Fabrice Bartolomei, Viktor Jirsa, Anna Zakharova, and Simona Olmi.
Patient-specific network connectivity combined with a next generation neural mass model to test clinical hypothesis of seizure propagation. Frontiers in systems neuroscience, page 79, 2021. |
| [22] |
Marián Kolenič, Filip španiel, Jaroslav Hlinka, Martin Matějka, Pavel
Knytl, Antonín šebela, Jiří Renka, and Tomas Hajek.
Higher body-mass index and lower gray matter volumes in first episode of psychosis. Frontiers in psychiatry, 11:1006, 2020. |
| [23] |
Marek Piorecky, Vlastimil Koudelka, Eva Miletinova, Jitka Buskova, Jan Strobl,
Jiri Horacek, Martin Brunovsky, Stanislav Jiricek, Jaroslav Hlinka, David
Tomecek, et al.
Simultaneous fmri-eeg-based characterisation of nrem parasomnia disease: Methods and limitations. Diagnostics, 10(12):1087, 2020. |
| [24] |
Moritz Gerster, Rico Berner, Jakub Sawicki, Anna Zakharova, Antonín Škoch,
Jaroslav Hlinka, Klaus Lehnertz, and Eckehard Schoell.
Fitzhugh-nagumo oscillators on complex networks mimic epileptic-seizure-related synchronization phenomena. Chaos: An Interdisciplinary Journal of Nonlinear Science, 30(12):123130, 2020. |
| [25] |
Jakub Kopal, Anna Pidnebesna, David Tomeček, Jaroslav Tintěra, and Jaroslav
Hlinka.
Typicality of functional connectivity robustly captures motion artifacts in rs-fmri across datasets, atlases, and preprocessing pipelines. Human brain mapping, 41(18):5325-5340, 2020. |
| [26] |
Ladislav Kesner, Iveta Fajnerová, Petr Adámek, Martin Buchtík, Dominika
Grygarová, Jaroslav Hlinka, Pavel Kozelka, Tereza NekováŘová, Filip
španiel, Jaroslav Tintěra, et al.
Fusiform activity distinguishes between subjects with low and high xenophobic attitudes toward refugees. Frontiers in Behavioral Neuroscience, 14:98, 2020. |
| [27] |
Jakub KoŘenek and Jaroslav Hlinka.
Causal network discovery by iterative conditioning: Comparison of algorithms. Chaos: An Interdisciplinary Journal of Nonlinear Science, 30(1):013117, 2020. |
| [28] |
Matias I Maturana, Christian Meisel, Katrina Dell, Philippa J Karoly, Wendyl
D’Souza, David B Grayden, Anthony N Burkitt, Premysl Jiruska, Jan Kudlacek,
Jaroslav Hlinka, et al.
Critical slowing down as a biomarker for seizure susceptibility. Nature Communications, 11(1):1-12, 2020. |
| [29] |
Michal Hadrava and Jaroslav Hlinka.
A dynamical systems approach to spectral music: Modelling the role of roughness and inharmonicity in perception of musical tension. Frontiers in Applied Mathematics and Statistics, 6:18, 2020. |
| [30] |
David Tomeček, Renata Androvičová, Iveta Fajnerová, Filip Děchtěrenko,
Jan Rydlo, Jiří Horáček, Jiří Lukavský, Jaroslav Tintěra, and
Jaroslav Hlinka.
Personality reflection in the brain’s intrinsic functional architecture remains elusive. PloS one, 15(6):e0232570, 2020. |
| [31] |
Iveta Fajnerova, David Gregus, Anna Francova, Eliska Noskova, Jana Koprivova,
Pavla Stopkova, Jaroslav Hlinka, and Jiri Horacek.
Functional connectivity changes in obsessive-compulsive disorder correspond with interference control and obsessions severity. Frontiers in Neurology, 11:568, 2020. |
| [32] |
Lukas Ramlow, Jakub Sawicki, Anna Zakharova, Jaroslav Hlinka, Jens Christian
Claussen, and Eckehard Schöll.
Partial synchronization in empirical brain networks as a model for unihemispheric sleep. EPL (Europhysics Letters), 126(5):50007, 2019. |
| [33] |
Benjamin Wahl, Ulrike Feudel, Jaroslav Hlinka, Matthias Wächter, Joachim
Peinke, and Jan A. Freund.
Residual predictive information flow in the tight coupling limit: Analytic insights from a minimalistic model. Entropy, 21(10), 2019. |
| [34] |
Isaura Oliver, Jaroslav Hlinka, Jakub Kopal, and Jörn Davidsen.
Quantifying the variability in resting-state networks. Entropy, 21(9), 2019. |
| [35] |
Yuliya Zaytseva, Jir'i Horáček, Jaroslav Hlinka, Iveta Fajnerová,
Renata Androvičová, Jaroslav Tintěra, Virginio Salvi, Marie Bal'iková,
Tomáš Hlozek, Filip Spaniel, and Tomás Pálen'iček.
Cannabis-induced altered states of consciousness are associated with specific dynamic brain connectivity states. Journal of Psychopharmacology, 33(7):811-821, 2019. |
| [36] |
Wei-Chih Chang, Jan Kudlacek, Jaroslav Hlinka, Jan Chvojka, Michal Hadrava,
Vojtech Kumpost, Andrew D. Powell, Radek Janca, Matias I. Maturana,
Philippa J. Karoly, Dean R. Freestone, Mark J. Cook, Milan Palus, Jakub
Otahal, John G. R. Jefferys, and Premysl Jiruska.
Loss of neuronal network resilience precedes seizures and determines the ictogenic nature of interictal synaptic perturbations. Nature Neuroscience, 21(12):1742+, 2018. |
| [37] |
Iveta Fajnerova, David Gregus, Jaroslav Hlinka, Tereza Nekovarova, Antonin
Skoch, Tomas Zitka, Jan Romportl, Eva Zackova, and Jiri Horacek.
Could prolonged usage of gps navigation implemented in augmented reality smart glasses affect hippocampal functional connectivity? BioMed Research International, 2018. |
| [38] |
David Hartman and Jaroslav Hlinka.
Nonlinearity in stock networks. Chaos: An Interdisciplinary Journal of Nonlinear Science, 28(8):083127, 2018. |
| [39] |
Marco Marino, Quanying Liu, Vlastimil Koudelka, Camillo Porcaro, Jaroslav
Hlinka, Nicole Wenderoth, and Dante Mantini.
Adaptive optimal basis set for bcg artifact removal in simultaneous eeg-fmri. Scientific reports, 8(1):8902, 2018. |
| [40] |
Pavol Mikolas, Jaroslav Hlinka, Antonin Skoch, Zbynek Pitra, Thomas Frodl,
Filip Spaniel, and Tomas Hajek.
Machine learning classification of first-episode schizophrenia spectrum disorders and controls using whole brain white matter fractional anisotropy. BMC psychiatry, 18(1):97, 2018. |
| [41] |
Marian Kolenic, Katja Franke, Jaroslav Hlinka, Martin Matejka, Jana Capkova,
Zdenka Pausova, Rudolf Uher, Martin Alda, Filip Spaniel, and Tomas Hajek.
Obesity, dyslipidemia and brain age in first-episode psychosis. Journal of Psychiatric Research, 99:151 - 158, 2018. |
| [42] |
Filip Spaniel, Eduard Bakstein, Jiri Anyz, Jaroslav Hlinka, Tomas Sieger, Jan
Hrdlicka, Natálie Görnerová, and Cyril Höschl.
Relapse in schizophrenia: Definitively not a bolt from the blue. Neuroscience letters, 669:68-74, 2018. |
| [43] |
Anna Pidnebesna, David Tomeček, and Jaroslav Hlinka.
BRAD: software for BRain Activity Detection from heamodynamic response. Computer Methods and Programs in Biomedicine, 156:113-119, 2018. |
| [44] |
Teresa Chouzouris, Iryna Omelchenko, Anna Zakharova, Jaroslav Hlinka, Premysl
Jiruska, and Eckehard Schöll.
Chimera states in brain networks: Empirical neural vs. modular fractal connectivity. Chaos: An Interdisciplinary Journal of Nonlinear Science, 28(4):045112, 2018. |
| [45] |
Jaroslav Hlinka, Nikola Jajcay, David Hartman, and Milan Palus.
Smooth information flow in temperature climate network reflects mass transport. Chaos: An Interdisciplinary Journal of Nonlinear Science, 27(3):035811, 2017. |
| [46] |
Jaroslav Hlinka, David Hartman, Nikola Jajcay, David Tomeček, Jaroslav
Tintěra, and Milan Palus.
Small-world bias of correlation networks: From brain to climate. Chaos: An Interdisciplinary Journal of Nonlinear Science, 27(3):035812, 2017. |
| [47] |
Benjamin Wahl, Ulrike Feudel, Jaroslav Hlinka, Matthias Wächter, Joachim
Peinke, and Jan A. Freund.
Conditional granger causality of diffusion processes. The European Physical Journal B, 90(10):197, 2017. |
| [48] |
Elliot A Martin, Jaroslav Hlinka, Alexander Meinke, Filip Děchtěrenko,
Jaroslav Tintěra, Isaura Oliver, and Jörn Davidsen.
Network inference and maximum entropy estimation on information diagrams. Scientific Reports, 7:7062, 2017. |
| [49] |
David Coufal, Jozef Jakubík, Nikola Jajcay, Jaroslav Hlinka, Anna Krakovská,
and Milan Paluš.
Detection of coupling delay: A problem not yet solved. Chaos: An Interdisciplinary Journal of Nonlinear Science, 27(8):083109, 2017. |
| [50] |
R. Androvicova, J. Horacek, J. Tintera, J. Hlinka, J. Rydlo, D. Jezova,
M. Balikova, T. Hlozek, P. Miksatkova, M. Kuchar, M. Roman, P. Tomicek,
F. Tyls, M. Viktorinova, and T. Palenicek.
Individual prolactin reactivity modulates response of nucleus accumbens to erotic stimuli during acute cannabis intoxication: an fmri pilot study. Psychopharmacology, pages 1-11, 2017. |
| [51] |
K Rasova, M Prochazkova, I Ibrahim, J Hlinka, and J Tintera.
Options for activation of plastic and adaptation processes in the central nervous system using physiotherapy in multiple sclerosis patients. Ceska a slovenska neurologie a neurochirurgie, 80(2):150-156, 2017. |
| [52] |
Radek Ptacek, Jiri Raboch, Vladimir Kebza, Iva Solcova, Martina Vnukova,
Jaroslav Hlinka, Jaroslav Kostal, Pavel Harsa, and Simon Strakaty.
Czech version of the shirom melamed burnout measure. Ceskoslovenska Psychologie, 61(6):536-545, 2017. |
| [53] |
Elliot A. Martin, Jaroslav Hlinka, and Jörn Davidsen.
Pairwise network information and nonlinear correlations. Phys. Rev. E, 94:040301, 2016. |
| [54] |
Benjamin Wahl, Ulrike Feudel, Jaroslav Hlinka, Matthias Wächter, Joachim
Peinke, and Jan A. Freund.
Granger-causality maps of diffusion processes. Physical Review E, 93(2):022213, 2016. |
| [55] |
Nikola Jajcay, Jaroslav Hlinka, Sergey Kravtsov, Anastasios A Tsonis, and Milan
Paluš.
Time scales of the european surface air temperature variability: The role of the 7-8 year cycle. Geophysical Research Letters, 2016. |
| [56] |
Martin Vejmelka, Lucie Pokorna, Jaroslav Hlinka, David Hartman, Nikola Jajcay,
and Milan Palus.
Non-random correlation structures and dimensionality reduction in multivariate climate data. Climate Dynamics, 44(9-10):2663-2682, 2015. |
| [57] |
Jakob Runge, Vladimir Petoukhov, Jonathan F. Donges, Jaroslav Hlinka, Nikola
Jajcay, Martin Vejmelka, David Hartman, Norbert Marwan, Milan Palus, and
Jurgen Kurths.
Identifying causal gateways and mediators in complex spatio-temporal systems. Nature communications, 6:8502-8502, 2015. |
| [58] |
T. Melicher, J. Horacek, J. Hlinka, F. Spaniel, J. Tintera, I. Ibrahim,
P. Mikolas, T. Novak, P. Mohr, and C. Hoschl.
White matter changes in first episode psychosis and their relation to the size of sample studied: A DTI study. Schizophrenia Research, 162(1–3):22 - 28, 2015. |
| [59] |
Jaroslav Hlinka and Michal Hadrava.
On the danger of detecting network states in white noise. Frontiers in Computational Neuroscience, 9, 2015. |
| [60] |
O. Profant, A. Skoch, Z. Balogova, J. Tintera, J. Hlinka, and J. Syka.
Diffusion tensor imaging and mr morphometry of the central auditory pathway and auditory cortex in aging. Neuroscience, 260:87-97, 2014. |
| [61] |
Jaroslav Hlinka, David Hartman, Martin Vejmelka, Dagmar Novotna, and Milan
Palus.
Non-linear dependence and teleconnections in climate data: sources, relevance, nonstationarity. Climate Dynamics, 42(7-8):1873-1886, 2014. |
| [62] |
J. Hlinka, D. Hartman, N. Jajcay, M. Vejmelka, R. Donner, N. Marvan, J. Kurths,
and M. Paluš.
Regional and inter-regional effects in evolving climate network. Nonlinear Processes in Geophysics, 21:451-462, 2014. |
| [63] |
Jaroslav Hlinka, David Hartman, Martin Vejmelka, Jakob Runge, Norbert Marwan,
Juergen Kurths, and Milan Palus.
Reliability of inference of directed climate networks using conditional mutual information. Entropy, 15(6):2023-2045, 2013. |
| [64] |
J. Hlinka, D. Hartman, and M. Palus.
Small-world topology of functional connectivity in randomly connected dynamical systems. Chaos, 22(3):033107, 2012. |
| [65] |
Jaroslav Hlinka and Stephen Coombes.
Using computational models to relate structural and functional brain connectivity. European Journal of Neuroscience, 36(2, SI):2137-2145, 2012. |
| [66] |
D. Hartman, J. Hlinka, M. Palus, D. Mantini, and M. Corbetta.
The role of nonlinearity in computing graph-theoretical properties of resting-state functional magnetic resonance imaging brain networks. Chaos, 21(1), 2011. |
| [67] |
M. Palus, D. Hartman, J. Hlinka, and M. Vejmelka.
Discerning connectivity from dynamics in climate networks. Nonlinear Processes in Geophysics, 18(5):751-763, 2011. |
| [68] |
Jaroslav Hlinka, Milan Palus, Martin Vejmelka, Dante Mantini, and Maurizio
Corbetta.
Functional connectivity in resting-state fmri: Is linear correlation sufficient? NeuroImage, 54:2218-2225, 2011. |
| [69] |
Jaroslav Hlinka, Charilaos Alexakis, Jonathan G. Hardman, Quazi Siddiqui, and
Dorothee P. Auer.
Is sedation-induced bold fmri low-frequency fluctuation increase mediated by increased motion? Magnetic Resonance Materials in Physics, Biology and Medicine, 23:367-374, 2010. |
| [70] |
Jaroslav Hlinka, Charilaos Alexakis, Ana Diukova, Peter F. Liddle, and
Dorothee P. Auer.
Slow eeg pattern predicts reduced intrinsic functional connectivity in the default mode network: An inter-subject analysis. NeuroImage, 53(1):239-246, 2010. |
| [71] |
Jaroslav Hlinka and Stephen Coombes.
Depolarization induced suppression of excitation and the emergence of ultraslow rhythms in neural networks. Physical Review Letters, 104(6):068101, 2010. |
| [72] |
R. A. Dineen, J. Vilisaar, J. Hlinka, C. M. Bradshaw, P. S. Morgan, C. S.
Constantinescu, and D. P. Auer.
Disconnection as a mechanism for cognitive dysfunction in multiple sclerosis. Brain, 132(1):239-249, 2009. |
| [73] |
L. Fekete, J. Y. Hlinka, F. Kadlec, P. Kuzel, and P. Mounaix.
Active optical control of the terahertz reflectivity of high-resistivity semiconductors. Optics Letters, 30(15):1992-1994, 2005. |
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